Question in Bioinformatics
Can someone help me ? In each one of the following paragraphs choose an appropiate alignment model according to the next parameters: a) Tool: blastn, blastp, psi-blast, translated blast, pairwise blast b) Alignment type: global, local c) Matrix: PAM30, PAM70, PAM250, BLOSUM50, BLOSUM62, BLOSUM100 d) Gap model: linear, affine and give a short arguement (description of the process) for your choices.: When you want to find a possible active site of a protein. When you want to find occurence of a bacterial protein in the human genome. When you have an uncharacterized protein sequence and want to find out what is its function.
Can someone help me ? In each one of the following paragraphs choose an appropiate alignment model according to the next parameters: a) Tool: blastn, blastp, psi-blast, translated blast, pairwise blast b) Alignment type: global, local c) Matrix: PAM30, PAM70, PAM250, BLOSUM50, BLOSUM62, BLOSUM100 d) Gap model: linear, affine and give a short arguement (description of the process) for your choices.: When you want to find a possible active site of a protein. When you want to find occurence of a bacterial protein in the human genome. When you have an uncharacterized protein sequence and want to find out what is its function.
